The Helvella lacunosa species complex in western North America: cryptic species, misapplied names and parasites.
Identifieur interne : 001A90 ( Main/Exploration ); précédent : 001A89; suivant : 001A91The Helvella lacunosa species complex in western North America: cryptic species, misapplied names and parasites.
Auteurs : Nhu H. Nguyen [États-Unis] ; Fidel Landeros ; Roberto Garibay-Orijel ; Karen Hansen ; Else C. VellingaSource :
- Mycologia [ 0027-5514 ]
Descripteurs français
- KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), Amérique du Nord (MeSH), Analyse de séquence d'ADN (MeSH), Ascomycota (classification), Ascomycota (cytologie), Ascomycota (génétique), Ascomycota (isolement et purification), Asie (MeSH), Données de séquences moléculaires (MeSH), Espaceur de l'ADN ribosomique (composition chimique), Espaceur de l'ADN ribosomique (génétique), Europe (MeSH), Mexique (MeSH), Mycorhizes (MeSH), Phylogenèse (MeSH), Quercus (microbiologie), Spores fongiques (MeSH), Spécificité d'espèce (MeSH), Séquence nucléotidique (MeSH).
- MESH :
- composition chimique : ADN fongique, ADN ribosomique, Ascomycota, Espaceur de l'ADN ribosomique.
- cytologie : Ascomycota.
- génétique : ADN fongique, ADN ribosomique, Ascomycota, Espaceur de l'ADN ribosomique.
- isolement et purification : Ascomycota.
- microbiologie : Quercus.
- Amérique du Nord, Analyse de séquence d'ADN, Asie, Données de séquences moléculaires, Europe, Mexique, Mycorhizes, Phylogenèse, Spores fongiques, Spécificité d'espèce, Séquence nucléotidique.
- Wicri :
- geographic : Mexique.
English descriptors
- KwdEn :
- Ascomycota (classification), Ascomycota (cytology), Ascomycota (genetics), Ascomycota (isolation & purification), Asia (MeSH), Base Sequence (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Europe (MeSH), Mexico (MeSH), Molecular Sequence Data (MeSH), Mycorrhizae (MeSH), North America (MeSH), Phylogeny (MeSH), Quercus (microbiology), Sequence Analysis, DNA (MeSH), Species Specificity (MeSH), Spores, Fungal (MeSH).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer.
- geographic : Asia, Europe, Mexico, North America.
- classification : Ascomycota.
- cytology : Ascomycota.
- genetics : Ascomycota.
- isolation & purification : Ascomycota.
- microbiology : Quercus.
- Base Sequence, Molecular Sequence Data, Mycorrhizae, Phylogeny, Sequence Analysis, DNA, Species Specificity, Spores, Fungal.
Abstract
Based on morphology, fungal species have been considered widespread and as a result names of species from Europe or eastern North America were applied to species in western North America. However, DNA sequences have shown that many western taxa are different from their European counterparts; one such case is presented here. Comparisons of ITS and LSU rDNA sequences from ectomycorrhizal root tips and ascomata of specimens identified as Helvella lacunosa from North America, Europe and Asia revealed that the taxa from western North America and Mexico formed a well supported clade different from the eastern North American, European and Asian taxa. Within this western North American clade there are at least four taxa. Here we describe two of these western taxa as new species: Helvella vespertina and Helvella dryophila. Helvella vespertina is a bigger version of H. lacunosa, is variable in hymenial color and shape and forms ectomycorrhizae with conifers; it fruits typically Oct-Jan. Helvella dryophila is characterized by a dark almost black, squat pileus, a light stipe when young, medium size and forms ectomycorrhizae with Quercus species; it fruits Jan-Jun. Due to insufficient material, the two other Helvella taxa are discussed but not formally described here. We also examined the Hypomyces and other mycoparasites associated with the ascomata of Helvella species and discuss misleadingly labeled sequences in public databases.
DOI: 10.3852/12-391
PubMed: 23709487
Affiliations:
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Nguyen</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, California 94720.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley</wicri:cityArea></affiliation></author><author><name sortKey="Landeros, Fidel" sort="Landeros, Fidel" uniqKey="Landeros F" first="Fidel" last="Landeros">Fidel Landeros</name></author><author><name sortKey="Garibay Orijel, Roberto" sort="Garibay Orijel, Roberto" uniqKey="Garibay Orijel R" first="Roberto" last="Garibay-Orijel">Roberto Garibay-Orijel</name></author><author><name sortKey="Hansen, Karen" sort="Hansen, Karen" uniqKey="Hansen K" first="Karen" last="Hansen">Karen Hansen</name></author><author><name sortKey="Vellinga, Else C" sort="Vellinga, Else C" uniqKey="Vellinga E" first="Else C" last="Vellinga">Else C. Vellinga</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013 Sep-Oct</date><idno type="RBID">pubmed:23709487</idno><idno type="pmid">23709487</idno><idno type="doi">10.3852/12-391</idno><idno type="wicri:Area/Main/Corpus">001C11</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001C11</idno><idno type="wicri:Area/Main/Curation">001C11</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001C11</idno><idno type="wicri:Area/Main/Exploration">001C11</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The Helvella lacunosa species complex in western North America: cryptic species, misapplied names and parasites.</title><author><name sortKey="Nguyen, Nhu H" sort="Nguyen, Nhu H" uniqKey="Nguyen N" first="Nhu H" last="Nguyen">Nhu H. 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However, DNA sequences have shown that many western taxa are different from their European counterparts; one such case is presented here. Comparisons of ITS and LSU rDNA sequences from ectomycorrhizal root tips and ascomata of specimens identified as Helvella lacunosa from North America, Europe and Asia revealed that the taxa from western North America and Mexico formed a well supported clade different from the eastern North American, European and Asian taxa. Within this western North American clade there are at least four taxa. Here we describe two of these western taxa as new species: Helvella vespertina and Helvella dryophila. Helvella vespertina is a bigger version of H. lacunosa, is variable in hymenial color and shape and forms ectomycorrhizae with conifers; it fruits typically Oct-Jan. Helvella dryophila is characterized by a dark almost black, squat pileus, a light stipe when young, medium size and forms ectomycorrhizae with Quercus species; it fruits Jan-Jun. Due to insufficient material, the two other Helvella taxa are discussed but not formally described here. We also examined the Hypomyces and other mycoparasites associated with the ascomata of Helvella species and discuss misleadingly labeled sequences in public databases. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23709487</PMID><DateCompleted><Year>2014</Year><Month>06</Month><Day>26</Day></DateCompleted><DateRevised><Year>2013</Year><Month>09</Month><Day>05</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>105</Volume><Issue>5</Issue><PubDate><MedlineDate>2013 Sep-Oct</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>The Helvella lacunosa species complex in western North America: cryptic species, misapplied names and parasites.</ArticleTitle><Pagination><MedlinePgn>1275-86</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3852/12-391</ELocationID><Abstract><AbstractText>Based on morphology, fungal species have been considered widespread and as a result names of species from Europe or eastern North America were applied to species in western North America. However, DNA sequences have shown that many western taxa are different from their European counterparts; one such case is presented here. Comparisons of ITS and LSU rDNA sequences from ectomycorrhizal root tips and ascomata of specimens identified as Helvella lacunosa from North America, Europe and Asia revealed that the taxa from western North America and Mexico formed a well supported clade different from the eastern North American, European and Asian taxa. Within this western North American clade there are at least four taxa. Here we describe two of these western taxa as new species: Helvella vespertina and Helvella dryophila. Helvella vespertina is a bigger version of H. lacunosa, is variable in hymenial color and shape and forms ectomycorrhizae with conifers; it fruits typically Oct-Jan. Helvella dryophila is characterized by a dark almost black, squat pileus, a light stipe when young, medium size and forms ectomycorrhizae with Quercus species; it fruits Jan-Jun. Due to insufficient material, the two other Helvella taxa are discussed but not formally described here. We also examined the Hypomyces and other mycoparasites associated with the ascomata of Helvella species and discuss misleadingly labeled sequences in public databases. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Nguyen</LastName><ForeName>Nhu H</ForeName><Initials>NH</Initials><AffiliationInfo><Affiliation>Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, California 94720.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Landeros</LastName><ForeName>Fidel</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Garibay-Orijel</LastName><ForeName>Roberto</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Hansen</LastName><ForeName>Karen</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Vellinga</LastName><ForeName>Else C</ForeName><Initials>EC</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>05</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001208" MajorTopicYN="N" Type="Geographic">Asia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005060" MajorTopicYN="N" Type="Geographic">Europe</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008800" MajorTopicYN="N" Type="Geographic">Mexico</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009656" MajorTopicYN="N" Type="Geographic">North America</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D029963" MajorTopicYN="N">Quercus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013172" MajorTopicYN="N">Spores, Fungal</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Helvellaceae</Keyword><Keyword MajorTopicYN="N">Hypomyces</Keyword><Keyword MajorTopicYN="N">North American mycoflora</Keyword><Keyword MajorTopicYN="N">biodiversity</Keyword><Keyword MajorTopicYN="N">host plants</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>5</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>5</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>6</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23709487</ArticleId><ArticleId IdType="pii">12-391</ArticleId><ArticleId IdType="doi">10.3852/12-391</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><noCountry><name sortKey="Garibay Orijel, Roberto" sort="Garibay Orijel, Roberto" uniqKey="Garibay Orijel R" first="Roberto" last="Garibay-Orijel">Roberto Garibay-Orijel</name><name sortKey="Hansen, Karen" sort="Hansen, Karen" uniqKey="Hansen K" first="Karen" last="Hansen">Karen Hansen</name><name sortKey="Landeros, Fidel" sort="Landeros, Fidel" uniqKey="Landeros F" first="Fidel" last="Landeros">Fidel Landeros</name><name sortKey="Vellinga, Else C" sort="Vellinga, Else C" uniqKey="Vellinga E" first="Else C" last="Vellinga">Else C. Vellinga</name></noCountry><country name="États-Unis"><region name="Californie"><name sortKey="Nguyen, Nhu H" sort="Nguyen, Nhu H" uniqKey="Nguyen N" first="Nhu H" last="Nguyen">Nhu H. Nguyen</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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